CNC Mode, Manual Z to 0

Hi All,
I'm using Repetier to drive my MPCNC, and so far I'm very happy with it in 3D print mode.
I'm having trouble with setting the origin in CNC mode, is there a way to set origin and run in relative co'ords without having to reconfigure the bed dimensions and Z probe height? I run a Z max endstop and a z probe for 3d print


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