Best Practices When Upgrading Repetier-Server Raspberry Pi Image

I'm at the point where I'm about to upgrade from my current version of 0.91.2 to the new stable release of 0.94.1.  I want to ensure I keep all the custom settings that I have made to the server.  For example, I want to keep my current print files uploaded to the server, all the projects I have created, and saved on the server as well as all my custom commands, etc.

So what's the proper method for upgrading the Raspberry Pi image while retaining all the custom settings made?
Thanks!

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