Communication timeout means we are connected over os (raspberry I guess?) with the printer, but we did not receive a line starting with "ok" form printer firmware that tells us, that it has received and processed our command, also we expected this. So if "timeout" defined in printer configuration has passed and we got no "ok" and no "busy" telling us that printer needs more time to execute we show that error and assume it was a communication error and send "ok" anyway.
The problem is not deciding what causes it. So in console if ack and command filter are disabled, do you see any responses from firmware when it continues? In that case it is just communication error and you might test solutions to improve communication quality.
If you get no responses new commands get send the linux driver is crashed. Seems to happen on some drivers with communication problems (maybe cross talk or other electric noise). Same combo often works stable for other users. As a intermediate solution we have an option "USB Reconnect after Timeout" that simulates that you unplugged usb cord so driver restarts. Works only on linux systems. You will still get pauses here until this is triggered, but print hopefully continues (if printer does not reset on reconnect which we try to prevent, but not all drivers support it).
In total you should check your system for electric problems.
- use short usb cable, double shielded maybe even with ferrite.
- Make sure cable is not close to other cables that are unshielded.
- If you are up to it check inside printer where the controller is, if cables are laying neatly, no blank contacts to housing or laying on usb output.
- Check also the bolt menu in server gui. Does it show undervoltage - never? If not, undervoltage in pi is also the cause of many problems. Then a better power source is needed. Do not use USB charger - they adjust voltage not fast enough even if amps match. You need a power supply that is made to hold a stable voltage and best one with 5.1 or 5.2V output. Also make sure usb to power supply has thick enough GND/5V cables or resistence of them will already drop voltage at higher load.