The forum won't let me post an STL file directly, but here is the code for a simple box which exhibits the problem:
solid box test
facet normal 0.0 0.0 -1.0
outer loop
vertex 2.54 2.54 0.0
vertex 0.0 0.0 0.0
vertex 0.0 2.54 0.0
endloop
endfacet
facet normal 0.0 0.0 -1.0
outer loop
vertex 0.0 0.0 0.0
vertex 2.54 2.54 0.0
vertex 2.54 0.0 0.0
endloop
endfacet
facet normal -0.0 -0.0 1.0
outer loop
vertex 2.54 0.0 0.254
vertex 0.0 2.54 0.254
vertex 0.0 0.0 0.254
endloop
endfacet
facet normal -0.0 -0.0 1.0
outer loop
vertex 0.0 2.54 0.254
vertex 2.54 0.0 0.254
vertex 2.54 2.54 0.254
endloop
endfacet
facet normal -0.0 -1.0 -0.0
outer loop
vertex 2.54 0.0 0.254
vertex 0.0 0.0 0.0
vertex 2.54 0.0 0.0
endloop
endfacet
facet normal -0.0 -1.0 -0.0
outer loop
vertex 0.0 0.0 0.0
vertex 2.54 0.0 0.254
vertex 0.0 0.0 0.254
endloop
endfacet
facet normal -1.0 0.0 0.0
outer loop
vertex 0.0 2.54 0.254
vertex 0.0 0.0 0.0
vertex 0.0 0.0 0.254
endloop
endfacet
facet normal -1.0 0.0 0.0
outer loop
vertex 0.0 0.0 0.0
vertex 0.0 2.54 0.254
vertex 0.0 2.54 0.0
endloop
endfacet
facet normal -0.0 1.0 0.0
outer loop
vertex 0.0 2.54 0.254
vertex 2.54 2.54 0.0
vertex 0.0 2.54 0.0
endloop
endfacet
facet normal -0.0 1.0 0.0
outer loop
vertex 2.54 2.54 0.0
vertex 0.0 2.54 0.254
vertex 2.54 2.54 0.254
endloop
endfacet
facet normal 1.0 0.0 0.0
outer loop
vertex 2.54 2.54 0.0
vertex 2.54 0.0 0.254
vertex 2.54 0.0 0.0
endloop
endfacet
facet normal 1.0 0.0 0.0
outer loop
vertex 2.54 0.0 0.254
vertex 2.54 2.54 0.0
vertex 2.54 2.54 0.254
endloop
endfacet
endsolid box test