I finally had time to flash the newest version of repetier firmware again and try setting the Z offset using the G1 S1 command. AND....fail. Using G1 Z-1 S1 the extruder will move below the endstop BUT every command seems to need the S1 added to it for it to work which is completely useless. In version 0.92.9 I did not have a problem at all. My extruder is 1.12 mm up from when the Z endstop is triggered so I need to lower the extruder 1.12mm and set the offset to be able to print at all. In the new version I can not move the extruder below the Z endstop and even if I set the offset the extruder will not drop below the Z endstop. I know it is a "safety" feature but it is pretty useless if it doesn't allow me to print at all. I have tried setting the Z offset with both the control panel and in the firmware, neither work to get the extruder to the go below the Z endstop to print properly. Am I missing something in the setup?