Here is the workaround for this bug in Cura temperature setting in Repetier.
1- In the cura slicer configuration setting, on the Print tab, do a "save as" of the default setting into another name "MyDefaultSettings"
2- In the cura slicer configuration setting, on the filament tab, do a "save as" of your filament setting "ABS"
3 - Setting DONE!
4- In the tab Slicer (just before you print), select the print configuration "MyDefaultSettings" and the Filament settings "ABS"
5- it finally generate the right temperature into the G-CODE.
Repetier version : V2.1.3
It looks like if you still take the printer default setting.. Repetier can't take any different filament setting than default.. even if you selected it!