You can enable logging in preferences->basic settings. It will create a file repetier.log in your work directory (reachable from file->work directory).
One difference with autoleveling is, is that z is constantly moving during print. If you loose steps while doing so or if printer has z backlash the layer height will vary. Normally z moves only slowly so no big jerk and acceleration and also no problem. But as a test you can reset autolevel matrix (M322) and enable autoleveling (M320) so your print is identical as without autoleveling but without these z moves and still autoleveling routines/transformations enabled.