It's unlikely that Repetier-Host will show something like that, because after sending g-code file by Repetier and finalize cutting, I can drive machine by Repetier-Host control GUI, but I will check it asap (I don't have machine in my garage right now) to be 100% sure.
I don't know exactly what do you mean by "does not contain the line numbers but only the output from host/pronterface". If you talk about "Nx" where x is started from 0 and incremented by each line before every g-code command, so yes, I have it in my gcodes. But I also tried without it (most of the time) and result is the same. Is it what you meant?