Well its back. However I have a better description of what is happening for others who are reading.
I noticed the fan shut off about part way through the heating cycle . I assumed it was the software shutting it down while it heats the extruder. so I put a volt meter on the D9 and D10 pins for the extruder heaters and observed a heating cycle .
What is occurring is sometimes during the heating cycle, power is disconnected from the D9, D10 and FAN . The heating light goes out on the board for D9 and D10. In Repetier it still shows power being applied. The thermistors lag behind the heaters a bit so Repetier does not see the heaters have "decoupled" (I say heater only because the thermistors are actually working)
D8 (heater) continues to function and maintain heat.
<font size="3"><font face="Arial, Verdana">Now I figured it out for sure. </font></font>
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<font size="3" style="font-family: Arial, Verdana; font-size: 10pt; font-style: normal; font-variant-ligatures: normal; font-variant-caps: normal; font-weight: normal; line-height: normal;"><font face="Arial, Verdana">if I have two 40w heaters firing up at the same time, that is a total 80w @ 12v drawing 6.66 Amps on a 5 Amp circuit. </font></font><font size="3" style="font-family: Arial, Verdana; font-size: 10pt; font-style: normal; font-variant-ligatures: normal; font-variant-caps: normal; font-weight: normal; line-height: 1.7em;"><font face="Arial, Verdana"> </font></font><font face="Arial, Verdana" size="3">So it seems my extruder heaters are simply overloading and shutting down the 5a circuit causing all my grief (which explains why the steppers are whacking out). The adruino is then being powered by the USB. </font>
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<font face="Arial, Verdana" size="3">N</font>ow I have to figure out how to limit the current by staggering in the heat-up cycles so they are not both not fully powered at the same time. (or limit the total power to 75%)